Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs4683875 | chr3:100918332 | C/T | 2.3E-7 | 406 | 15.67 | 14.98 | 10.07 | KM Plot |
| LGG | rs4683876 | chr3:100918462 | C/T | 7.74E-5 | 394 | 15.72 | 15.2 | 12.77 | KM Plot |
| LGG | rs4683877 | chr3:100921280 | G/A | 4.48E-5 | 406 | 15.72 | 14.93 | 12.77 | KM Plot |
| LGG | rs4683965 | chr3:100906501 | C/G | 1.4E-5 | 393 | 15.7 | 14.8 | 8.43 | KM Plot |
| LGG | rs4711862 | chr6:46932820 | C/A | 1.25E-5 | 405 | 15.03 | 16.73 | 12.5 | KM Plot |
| LGG | rs4714966 | chr6:46926437 | T/G | 1.75E-5 | 403 | 15.03 | 16.37 | 12.5 | KM Plot |
| LGG | rs4714967 | chr6:46930643 | C/T | 1.6E-5 | 405 | 15.13 | 16.55 | 12.5 | KM Plot |
| LGG | rs4714968 | chr6:46930741 | T/C | 1.6E-5 | 405 | 15.13 | 16.55 | 12.5 | KM Plot |
| LGG | rs4714969 | chr6:46930810 | T/C | 1.6E-5 | 405 | 15.13 | 16.55 | 12.5 | KM Plot |
| LGG | rs4714970 | chr6:46930890 | C/A | 1.6E-5 | 405 | 15.13 | 16.55 | 12.5 | KM Plot |
| LGG | rs4714971 | chr6:46930967 | T/C | 1.6E-5 | 405 | 15.13 | 16.55 | 12.5 | KM Plot |
| LGG | rs4714972 | chr6:46931019 | T/G | 1.6E-5 | 405 | 15.13 | 16.55 | 12.5 | KM Plot |
| LGG | rs4714974 | chr6:46932929 | C/T | 1.51E-5 | 406 | 15.13 | 16.73 | 12.5 | KM Plot |
| LGG | rs4714975 | chr6:46933051 | A/T | 1.51E-5 | 407 | 15.03 | 16.73 | 12.5 | KM Plot |
| LGG | rs4718246 | chr7:64933116 | T/C | 9.18E-8 | 400 | 15.57 | 15.2 | 2.27 | KM Plot |